基因数据处理22之对GRCH38全基因建立BWA索引
发布时间:2021-05-16 06:43:33 所属栏目:大数据 来源:网络整理
导读:副标题#e# 环境: ubuntu 14.04 内存 6G bwa 0.7.12 结论: 建立索引大概4500秒左右 节点2运行: hadoop@Mcnode2:~/cloud/adam/xubo/data/test20160422$ cp ../test20160310/GCA_000001405.15_GRCh38/GCA_000001405.15_GRCh38_full_analysis_set.fna .hadoo
hadoop@Mcnode2:~/cloud/adam/xubo/data/test20160422$ ll -h total 8.3G drwxrwxr-x 2 hadoop hadoop 4.0K 4月 22 16:36 ./ drwxrwxr-x 4 hadoop hadoop 4.0K 4月 22 15:20 ../ -rw------- 1 hadoop hadoop 3.1G 4月 22 15:22 GCA_000001405.15_GRCh38_full_analysis_set.fna -rw-rw-r-- 1 hadoop hadoop 20K 4月 22 16:18 GCA_000001405.15_GRCh38_full_analysis_set.fna.amb -rw-rw-r-- 1 hadoop hadoop 72K 4月 22 16:18 GCA_000001405.15_GRCh38_full_analysis_set.fna.ann -rw-rw-r-- 1 hadoop hadoop 3.0G 4月 22 16:17 GCA_000001405.15_GRCh38_full_analysis_set.fna.bwt -rw-rw-r-- 1 hadoop hadoop 766M 4月 22 16:18 GCA_000001405.15_GRCh38_full_analysis_set.fna.pac -rw-rw-r-- 1 hadoop hadoop 1.5G 4月 22 16:37 GCA_000001405.15_GRCh38_full_analysis_set.fna.sa 节点3运行: (编辑:PHP编程网 - 湛江站长网) 【声明】本站内容均来自网络,其相关言论仅代表作者个人观点,不代表本站立场。若无意侵犯到您的权利,请及时与联系站长删除相关内容! |
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